WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08B2.5b.1 Sequence Name  T08B2.5b.1
Length (nt)  2871   Chromosome Location  I: 6215773-6219912
Chromosome . Primary Identifier  I Chromosome Location . Start  6215773
Chromosome Location . End  6219912 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08B2.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020346 rbm-5 T08B2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08B2.5b T08B2.5b 2778   I: 6215791-6215847

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08B2.5b.1 6215773 6219912 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon15375   75   I: 6215773-6215847 Caenorhabditis elegans
Exon15379   69   I: 6215919-6215987 Caenorhabditis elegans
Exon15385   110   I: 6216059-6216168 Caenorhabditis elegans
Exon15396   233   I: 6216359-6216591 Caenorhabditis elegans
Exon15400   116   I: 6216678-6216793 Caenorhabditis elegans
Exon15402   132   I: 6217123-6217254 Caenorhabditis elegans
Exon15406   150   I: 6217303-6217452 Caenorhabditis elegans
Exon15413   105   I: 6217500-6217604 Caenorhabditis elegans
Exon15420   118   I: 6217651-6217768 Caenorhabditis elegans
Exon15427   207   I: 6217818-6218024 Caenorhabditis elegans
Exon15434   117   I: 6218068-6218184 Caenorhabditis elegans
Exon15440   80   I: 6218230-6218309 Caenorhabditis elegans
Exon15447   163   I: 6218353-6218515 Caenorhabditis elegans
Exon15454   363   I: 6218564-6218926 Caenorhabditis elegans
Exon15461   281   I: 6218976-6219256 Caenorhabditis elegans
Exon15468   334   I: 6219316-6219649 Caenorhabditis elegans
Exon15480   218   I: 6219695-6219912 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08B2.5b.1 6215773 6219912 1

1 Sequence

Length
2871

1 Sequence Ontology Term

Identifier Name Description
transcript