WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11C1.5a.2 Sequence Name  F11C1.5a.2
Length (nt)  5496   Chromosome Location  X: 12991489-12999642
Chromosome . Primary Identifier  X Chromosome Location . Start  12991489
Chromosome Location . End  12999642 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11C1.5a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008694 vwa-8 F11C1.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11C1.5a F11C1.5a 5415   X: 12991499-12991559

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F11C1.5a.2 12991489 12999642 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon256560   71   X: 12991489-12991559 Caenorhabditis elegans
Exon256562   230   X: 12991607-12991836 Caenorhabditis elegans
Exon256565   111   X: 12992168-12992278 Caenorhabditis elegans
Exon256568   486   X: 12992326-12992811 Caenorhabditis elegans
Exon256571   117   X: 12992891-12993007 Caenorhabditis elegans
Exon256574   569   X: 12993055-12993623 Caenorhabditis elegans
Exon256577   238   X: 12994048-12994285 Caenorhabditis elegans
Exon256580   443   X: 12994341-12994783 Caenorhabditis elegans
Exon256583   100   X: 12994828-12994927 Caenorhabditis elegans
Exon256586   217   X: 12995080-12995296 Caenorhabditis elegans
Exon256589   230   X: 12995344-12995573 Caenorhabditis elegans
Exon256592   118   X: 12995627-12995744 Caenorhabditis elegans
Exon256595   353   X: 12995856-12996208 Caenorhabditis elegans
Exon256597   111   X: 12996555-12996665 Caenorhabditis elegans
Exon256599   88   X: 12996709-12996796 Caenorhabditis elegans
Exon256601   70   X: 12996841-12996910 Caenorhabditis elegans
Exon256603   127   X: 12996955-12997081 Caenorhabditis elegans
Exon256605   159   X: 12997131-12997289 Caenorhabditis elegans
Exon256607   181   X: 12997340-12997520 Caenorhabditis elegans
Exon256609   106   X: 12997741-12997846 Caenorhabditis elegans
Exon256611   246   X: 12997891-12998136 Caenorhabditis elegans
Exon256613   220   X: 12998184-12998403 Caenorhabditis elegans
Exon256615   102   X: 12998448-12998549 Caenorhabditis elegans
Exon256617   101   X: 12998595-12998695 Caenorhabditis elegans
Exon256619   184   X: 12998746-12998929 Caenorhabditis elegans
Exon256621   120   X: 12999013-12999132 Caenorhabditis elegans
Exon256623   122   X: 12999184-12999305 Caenorhabditis elegans
Exon256625   276   X: 12999367-12999642 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F11C1.5a.2 12991489 12999642 1

1 Sequence

Length
5496

1 Sequence Ontology Term

Identifier Name Description
transcript