WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C53C7.1a Sequence Name  C53C7.1a
Length (nt)  1098   Chromosome Location  X: 13018880-13018969
Chromosome . Primary Identifier  X Chromosome Location . Start  13018880
Chromosome Location . End  13018969
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53C7.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE19767 NPR-10, isoform a 40.8 365 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00043087
WBRNAi00072203
WBRNAi00012357
WBRNAi00030111

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C53C7.1a 13018880 13018969 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008278 npr-10 C53C7.1 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:C53C7.1a 13018880 13018969 -1
CDS:C53C7.1a 13019026 13019140 -1
CDS:C53C7.1a 13019419 13019549 -1
CDS:C53C7.1a 13020121 13020305 -1
CDS:C53C7.1a 13020359 13020528 -1
CDS:C53C7.1a 13020575 13020657 -1
CDS:C53C7.1a 13020884 13021088 -1
CDS:C53C7.1a 13021905 13022023 -1

1 Sequence

Length
1098

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C53C7.1a.1 C53C7.1a.1 1671   X: 13018393-13032704
Transcript:C53C7.1a.2 C53C7.1a.2 1604   X: 13018393-13022042