WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48C11.2b.1 Sequence Name  F48C11.2b.1
Length (nt)  1689   Chromosome Location  X: 13182463-13185646
Chromosome . Primary Identifier  X Chromosome Location . Start  13182463
Chromosome Location . End  13185646 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48C11.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009844 cwp-5 F48C11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48C11.2b F48C11.2b 1689   X: 13182463-13182540

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F48C11.2b.1 13182463 13185646 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257075   78   X: 13182463-13182540 Caenorhabditis elegans
Exon257077   190   X: 13183248-13183437 Caenorhabditis elegans
Exon257079   72   X: 13183498-13183569 Caenorhabditis elegans
Exon257082   87   X: 13183613-13183699 Caenorhabditis elegans
Exon257084   54   X: 13183767-13183820 Caenorhabditis elegans
Exon257086   403   X: 13183881-13184283 Caenorhabditis elegans
Exon257088   99   X: 13184478-13184576 Caenorhabditis elegans
Exon257090   134   X: 13184714-13184847 Caenorhabditis elegans
Exon257092   469   X: 13184975-13185443 Caenorhabditis elegans
Exon257094   100   X: 13185501-13185600 Caenorhabditis elegans
Exon257095   3   X: 13185644-13185646 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F48C11.2b.1 13182463 13185646 -1

1 Sequence

Length
1689

1 Sequence Ontology Term

Identifier Name Description
transcript