WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48C11.2a.1 Sequence Name  F48C11.2a.1
Length (nt)  2389   Chromosome Location  X: 13182114-13189961
Chromosome . Primary Identifier  X Chromosome Location . Start  13182114
Chromosome Location . End  13189961 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48C11.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009844 cwp-5 F48C11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48C11.2a F48C11.2a 2040   X: 13182463-13182540

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F48C11.2a.1 13182114 13189961 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257101   427   X: 13182114-13182540 Caenorhabditis elegans
Exon257103   190   X: 13183248-13183437 Caenorhabditis elegans
Exon257105   72   X: 13183498-13183569 Caenorhabditis elegans
Exon257108   87   X: 13183613-13183699 Caenorhabditis elegans
Exon257110   54   X: 13183767-13183820 Caenorhabditis elegans
Exon257112   403   X: 13183881-13184283 Caenorhabditis elegans
Exon257114   99   X: 13184478-13184576 Caenorhabditis elegans
Exon257116   134   X: 13184714-13184847 Caenorhabditis elegans
Exon257118   469   X: 13184975-13185443 Caenorhabditis elegans
Exon257120   100   X: 13185501-13185600 Caenorhabditis elegans
Exon257123   311   X: 13186113-13186423 Caenorhabditis elegans
Exon257124   43   X: 13189919-13189961 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F48C11.2a.1 13182114 13189961 -1

1 Sequence

Length
2389

1 Sequence Ontology Term

Identifier Name Description
transcript