WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00195616 Gene Name  C49F8.5
Sequence Name  ? C49F8.5 Organism  Caenorhabditis elegans
Automated Description  Is affected by adr-1 and etr-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 212
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00195616

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C49F8.5 C49F8.5 212   X: 13351110-13351321
 

Other

0 CDSs

0 RNAi Result

16 Allele

Public Name
gk964260
gk964029
gk962707
gk964028
gk963810
gk963581
gk435903
gk562074
gk355447
gk655997
gk391546
gk391547
gk298462
WBVar01572392
gk298461
gk298460

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00195616 13351110 13351321 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_13351322..13351388   67 X: 13351322-13351388 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_upregulated
  Transcripts of noncoding genes that showed significantly increased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_enriched_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00195616 13351110 13351321 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
212

1 Sequence Ontology Term