WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48B6.6a.1 Sequence Name  C48B6.6a.1
Length (nt)  7597   Chromosome Location  I: 6900949-6913579
Chromosome . Primary Identifier  I Chromosome Location . Start  6900949
Chromosome Location . End  6913579 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48B6.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004879 smg-1 C48B6.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48B6.6a C48B6.6a 6969   I: 6901549-6901626

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48B6.6a.1 6900949 6913579 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

42 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon17475   678   I: 6900949-6901626 Caenorhabditis elegans
Exon17477   134   I: 6901706-6901839 Caenorhabditis elegans
Exon17479   98   I: 6901884-6901981 Caenorhabditis elegans
Exon17481   81   I: 6902055-6902135 Caenorhabditis elegans
Exon17483   161   I: 6902256-6902416 Caenorhabditis elegans
Exon17485   88   I: 6902492-6902579 Caenorhabditis elegans
Exon17487   353   I: 6902657-6903009 Caenorhabditis elegans
Exon17489   297   I: 6903114-6903410 Caenorhabditis elegans
Exon17491   105   I: 6903459-6903563 Caenorhabditis elegans
Exon17493   238   I: 6903650-6903887 Caenorhabditis elegans
Exon17495   149   I: 6903988-6904136 Caenorhabditis elegans
Exon17497   84   I: 6904182-6904265 Caenorhabditis elegans
Exon17499   171   I: 6904508-6904678 Caenorhabditis elegans
Exon17501   285   I: 6904723-6905007 Caenorhabditis elegans
Exon17503   179   I: 6905054-6905232 Caenorhabditis elegans
Exon17505   121   I: 6905781-6905901 Caenorhabditis elegans
Exon17507   145   I: 6905955-6906099 Caenorhabditis elegans
Exon17509   296   I: 6906145-6906440 Caenorhabditis elegans
Exon17511   146   I: 6906544-6906689 Caenorhabditis elegans
Exon17513   285   I: 6906736-6907020 Caenorhabditis elegans
Exon17515   266   I: 6907116-6907381 Caenorhabditis elegans
Exon17517   126   I: 6907588-6907713 Caenorhabditis elegans
Exon17519   110   I: 6907786-6907895 Caenorhabditis elegans
Exon17521   88   I: 6907943-6908030 Caenorhabditis elegans
Exon17523   230   I: 6908081-6908310 Caenorhabditis elegans
Exon17525   108   I: 6908392-6908499 Caenorhabditis elegans
Exon17527   224   I: 6908541-6908764 Caenorhabditis elegans
Exon17529   203   I: 6908839-6909041 Caenorhabditis elegans
Exon17531   135   I: 6909087-6909221 Caenorhabditis elegans
Exon17533   153   I: 6909917-6910069 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48B6.6a.1 6900949 6913579 -1

1 Sequence

Length
7597

1 Sequence Ontology Term

Identifier Name Description
transcript