WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48B6.6b.1 Sequence Name  C48B6.6b.1
Length (nt)  6975   Chromosome Location  I: 6901549-6913551
Chromosome . Primary Identifier  I Chromosome Location . Start  6901549
Chromosome Location . End  6913551 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48B6.6b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004879 smg-1 C48B6.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48B6.6b C48B6.6b 6975   I: 6901549-6901626

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48B6.6b.1 6901549 6913551 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

42 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon17476   78   I: 6901549-6901626 Caenorhabditis elegans
Exon17478   134   I: 6901706-6901839 Caenorhabditis elegans
Exon17480   98   I: 6901884-6901981 Caenorhabditis elegans
Exon17482   81   I: 6902055-6902135 Caenorhabditis elegans
Exon17484   161   I: 6902256-6902416 Caenorhabditis elegans
Exon17486   88   I: 6902492-6902579 Caenorhabditis elegans
Exon17488   353   I: 6902657-6903009 Caenorhabditis elegans
Exon17490   297   I: 6903114-6903410 Caenorhabditis elegans
Exon17492   105   I: 6903459-6903563 Caenorhabditis elegans
Exon17494   238   I: 6903650-6903887 Caenorhabditis elegans
Exon17496   149   I: 6903988-6904136 Caenorhabditis elegans
Exon17498   84   I: 6904182-6904265 Caenorhabditis elegans
Exon17500   171   I: 6904508-6904678 Caenorhabditis elegans
Exon17502   285   I: 6904723-6905007 Caenorhabditis elegans
Exon17504   179   I: 6905054-6905232 Caenorhabditis elegans
Exon17506   121   I: 6905781-6905901 Caenorhabditis elegans
Exon17508   145   I: 6905955-6906099 Caenorhabditis elegans
Exon17510   296   I: 6906145-6906440 Caenorhabditis elegans
Exon17512   146   I: 6906544-6906689 Caenorhabditis elegans
Exon17514   285   I: 6906736-6907020 Caenorhabditis elegans
Exon17516   266   I: 6907116-6907381 Caenorhabditis elegans
Exon17518   126   I: 6907588-6907713 Caenorhabditis elegans
Exon17520   110   I: 6907786-6907895 Caenorhabditis elegans
Exon17522   88   I: 6907943-6908030 Caenorhabditis elegans
Exon17524   230   I: 6908081-6908310 Caenorhabditis elegans
Exon17526   108   I: 6908392-6908499 Caenorhabditis elegans
Exon17528   224   I: 6908541-6908764 Caenorhabditis elegans
Exon17530   209   I: 6908839-6909047 Caenorhabditis elegans
Exon17532   135   I: 6909087-6909221 Caenorhabditis elegans
Exon17534   153   I: 6909917-6910069 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48B6.6b.1 6901549 6913551 -1

1 Sequence

Length
6975

1 Sequence Ontology Term

Identifier Name Description
transcript