WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04A11.2.1 Sequence Name  C04A11.2.1
Length (nt)  1606   Chromosome Location  X: 13665958-13668828
Chromosome . Primary Identifier  X Chromosome Location . Start  13665958
Chromosome Location . End  13668828 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04A11.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007286 C04A11.2 C04A11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04A11.2 C04A11.2 1320   X: 13666114-13666152

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04A11.2.1 13665958 13668828 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258148   195   X: 13665958-13666152 Caenorhabditis elegans
Exon258149   100   X: 13666201-13666300 Caenorhabditis elegans
Exon258150   122   X: 13666352-13666473 Caenorhabditis elegans
Exon258151   200   X: 13666549-13666748 Caenorhabditis elegans
Exon258152   223   X: 13666949-13667171 Caenorhabditis elegans
Exon258153   328   X: 13667376-13667703 Caenorhabditis elegans
Exon258154   136   X: 13667753-13667888 Caenorhabditis elegans
Exon258155   62   X: 13667935-13667996 Caenorhabditis elegans
Exon258156   81   X: 13668076-13668156 Caenorhabditis elegans
Exon258157   159   X: 13668670-13668828 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04A11.2.1 13665958 13668828 -1

1 Sequence

Length
1606

1 Sequence Ontology Term

Identifier Name Description
transcript