WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T21H8.1g.1 Sequence Name  T21H8.1g.1
Length (nt)  3440   Chromosome Location  X: 13865034-13882739
Chromosome . Primary Identifier  X Chromosome Location . Start  13865034
Chromosome Location . End  13882739 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T21H8.1g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011904 hlb-1 T21H8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T21H8.1g T21H8.1g 2889   X: 13865539-13865577

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T21H8.1g.1 13865034 13882739 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258494   544   X: 13865034-13865577 Caenorhabditis elegans
Exon258515   111   X: 13865744-13865854 Caenorhabditis elegans
Exon258532   189   X: 13865906-13866094 Caenorhabditis elegans
Exon258549   138   X: 13866400-13866537 Caenorhabditis elegans
Exon258566   707   X: 13866590-13867296 Caenorhabditis elegans
Exon258588   61   X: 13868032-13868092 Caenorhabditis elegans
Exon258600   127   X: 13868147-13868273 Caenorhabditis elegans
Exon258617   314   X: 13868448-13868761 Caenorhabditis elegans
Exon258634   246   X: 13868859-13869104 Caenorhabditis elegans
Exon258647   141   X: 13869748-13869888 Caenorhabditis elegans
Exon258662   114   X: 13870263-13870376 Caenorhabditis elegans
Exon258677   102   X: 13870431-13870532 Caenorhabditis elegans
Exon258705   188   X: 13876517-13876704 Caenorhabditis elegans
Exon258712   87   X: 13877266-13877352 Caenorhabditis elegans
Exon258724   174   X: 13877409-13877582 Caenorhabditis elegans
Exon258734   79   X: 13880942-13881020 Caenorhabditis elegans
Exon258742   118   X: 13882622-13882739 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T21H8.1g.1 13865034 13882739 -1

1 Sequence

Length
3440

1 Sequence Ontology Term

Identifier Name Description
transcript