WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T21H8.1k.1 Sequence Name  T21H8.1k.1
Length (nt)  2823   Chromosome Location  X: 13865539-13881026
Chromosome . Primary Identifier  X Chromosome Location . Start  13865539
Chromosome Location . End  13881026 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T21H8.1k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011904 hlb-1 T21H8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T21H8.1k T21H8.1k 2613   X: 13865539-13865577

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T21H8.1k.1 13865539 13881026 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258508   39   X: 13865539-13865577 Caenorhabditis elegans
Exon258519   111   X: 13865744-13865854 Caenorhabditis elegans
Exon258536   189   X: 13865906-13866094 Caenorhabditis elegans
Exon258553   138   X: 13866400-13866537 Caenorhabditis elegans
Exon258570   707   X: 13866590-13867296 Caenorhabditis elegans
Exon258590   61   X: 13868032-13868092 Caenorhabditis elegans
Exon258604   127   X: 13868147-13868273 Caenorhabditis elegans
Exon258621   314   X: 13868448-13868761 Caenorhabditis elegans
Exon258638   246   X: 13868859-13869104 Caenorhabditis elegans
Exon258651   141   X: 13869748-13869888 Caenorhabditis elegans
Exon258666   114   X: 13870263-13870376 Caenorhabditis elegans
Exon258681   102   X: 13870431-13870532 Caenorhabditis elegans
Exon258709   188   X: 13876517-13876704 Caenorhabditis elegans
Exon258716   87   X: 13877266-13877352 Caenorhabditis elegans
Exon258728   174   X: 13877409-13877582 Caenorhabditis elegans
Exon258738   85   X: 13880942-13881026 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T21H8.1k.1 13865539 13881026 -1

1 Sequence

Length
2823

1 Sequence Ontology Term

Identifier Name Description
transcript