WormMine: Gene WBGene00219559

• WormBase Gene ID: WBGene00219559
• Gene Name: linc-5
• Sequence Name: C04C11.24
• Organism: Caenorhabditis elegans
• Automated Description: Expressed in muscle cell.
• Biotype: SO:0001641
• Genetic Position: X :16.0052±
• Length (nt): 767

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219559

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C04C11.24	C04C11.24	527	X: 14018610-14019376

Other

0 CDSs

0 RNAi Result

21 Allele

• gk964260
• gk964029
• gk962707
• gk964028
• gk963810
• gk963581
• gk963672
• tm11378
• gk300027
• gk300028
• gk434543
• gk809520
• gk875815
• gk902935
• gk605405
• WBVar01981595
• h14301
• WBVar00084492
• WBVar01825319
• gk743799
• gk743800

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219559
• Start: 14018610
• End: 14019376
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrX_14019377..14019961
• Length (nt): 585
• Chromosome Location: X: 14019377-14019961
• Organism: Caenorhabditis elegans

22 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
Bacteria: B.thuringiensis	Transcripts in elt-2(RNAi) animals that were significantly differentially expressed at least for one time point and one pathogenic strain Bt247 and Bt679 compared to the non pathogenic strain Bt407.	Cuffdiff	WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
	Transcripts that showed significantly increased expression in swsn-2.2(RNAi) comparing to in control animals.	Cuffdiff was used to identify differentially expressed genes.	WBPaper00049018:swsn-2.2(RNAi)_upregulated
Bacteria infection: Enterococcus faecalis OG1RF. Exposure for 16 hours.	Transcripts that showed significantly increased expression in hpx-2(dg047) after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.	Cuffcompare and Cuffdiff	WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
	Transcripts that showed significantly decreased expression in animals exposed to 400uM tamoxifen from L1 to L4 larva stage.	DEseq2, fold change > 2	WBPaper00064505:tamoxifen_downregulated
	Transcripts that showed significantly increased expression in ham-3(RNAi) comparing to in control animals.	Cuffdiff was used to identify differentially expressed genes.	WBPaper00049018:ham-3(RNAi)_upregulated
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2.	DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5.	WBPaper00055226:adr-1(tm668)_downregulated
	Transcripts enriched in VB2 according to single cell RNAseq.	Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.	WBPaper00066550:VB2_enriched
	Single-cell RNA-Seq cell group 131_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:131_0
	Transcripts enriched in ALA according to single cell RNAseq.	Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.	WBPaper00061651:ALA_enriched
	Single-cell RNA-Seq cell group 139_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:139_0
	Transcripts that showed significantly increased expression in mitosis germline cells comparing to in meiosis germline cells.	Log2 Fold change > 2 or <-1, p-value < 0.05.	WBPaper00053599:mitosis_vs_meiosis_upregulated
	Transcripts enriched in DB1 according to single cell RNAseq.	Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.	WBPaper00066550:DB1_enriched
	Single-cell RNA-Seq cell group 103_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:103_0
	Transcripts enriched in AIZ according to single cell RNAseq.	Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.	WBPaper00061651:AIZ_enriched
	Single-cell RNA-Seq cell group 50_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:50_0
	Transcripts enriched in AVG according to single cell RNAseq.	Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.	WBPaper00061651:AVG_enriched
	Single-cell RNA-Seq cell group 87_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:87_0
	Transcripts enriched in DVA according to single cell RNAseq.	Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.	WBPaper00061651:DVA_enriched
	Single-cell RNA-Seq cell group 129_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:129_0
	Transcripts enriched in RID according to single cell RNAseq.	Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.	WBPaper00061651:RID_enriched
	lncRNAs that showed decreased expression after exposure to graphene oxide (GO) from L1 larva to young adulthood.	N.A.	WBPaper00049772:graphene-oxide_downregulated_lncRNA

1 Expression Patterns

• Primary Identifier: Expr13249
• Remark: Construct details not specified.
• Pattern: Further validation by fluorescent reporter showed that the three annotated lincRNAs detected by our muscle profiling (linc-5, linc-55 and linc-57) were muscle-enriched.

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219559
• Start: 14018610
• End: 14019376
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 767

1 Sequence Ontology Term