WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E4.1g.1 Sequence Name  F54E4.1g.1
Length (nt)  9675   Chromosome Location  X: 14611374-14624855
Chromosome . Primary Identifier  X Chromosome Location . Start  14611374
Chromosome Location . End  14624855 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E4.1g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004313 rbc-1 F54E4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E4.1g F54E4.1g 9051   X: 14611403-14611489

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1g.1 14611374 14624855 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

33 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon260286   116   X: 14611374-14611489 Caenorhabditis elegans
Exon260300   204   X: 14611539-14611742 Caenorhabditis elegans
Exon260308   195   X: 14611897-14612091 Caenorhabditis elegans
Exon260316   461   X: 14612147-14612607 Caenorhabditis elegans
Exon260324   293   X: 14612898-14613190 Caenorhabditis elegans
Exon260332   131   X: 14613250-14613380 Caenorhabditis elegans
Exon260340   483   X: 14613431-14613913 Caenorhabditis elegans
Exon260348   386   X: 14614057-14614442 Caenorhabditis elegans
Exon260356   318   X: 14614493-14614810 Caenorhabditis elegans
Exon260364   59   X: 14614858-14614916 Caenorhabditis elegans
Exon260372   538   X: 14614966-14615503 Caenorhabditis elegans
Exon260376   68   X: 14615551-14615618 Caenorhabditis elegans
Exon260388   90   X: 14615874-14615963 Caenorhabditis elegans
Exon260396   101   X: 14616015-14616115 Caenorhabditis elegans
Exon260404   302   X: 14616161-14616462 Caenorhabditis elegans
Exon260412   135   X: 14616522-14616656 Caenorhabditis elegans
Exon260420   424   X: 14616704-14617127 Caenorhabditis elegans
Exon260428   316   X: 14617187-14617502 Caenorhabditis elegans
Exon260436   350   X: 14617691-14618040 Caenorhabditis elegans
Exon260444   371   X: 14618089-14618459 Caenorhabditis elegans
Exon260452   829   X: 14618507-14619335 Caenorhabditis elegans
Exon260460   349   X: 14619890-14620238 Caenorhabditis elegans
Exon260468   173   X: 14620281-14620453 Caenorhabditis elegans
Exon260476   409   X: 14620504-14620912 Caenorhabditis elegans
Exon260484   414   X: 14620959-14621372 Caenorhabditis elegans
Exon260492   166   X: 14621664-14621829 Caenorhabditis elegans
Exon260500   154   X: 14621877-14622030 Caenorhabditis elegans
Exon260508   240   X: 14622088-14622327 Caenorhabditis elegans
Exon260516   99   X: 14622375-14622473 Caenorhabditis elegans
Exon260521   45   X: 14622571-14622615 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1g.1 14611374 14624855 1

1 Sequence

Length
9675

1 Sequence Ontology Term

Identifier Name Description
transcript