WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E4.1a.1 Sequence Name  F54E4.1a.1
Length (nt)  9656   Chromosome Location  X: 14611380-14624854
Chromosome . Primary Identifier  X Chromosome Location . Start  14611380
Chromosome Location . End  14624854 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E4.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004313 rbc-1 F54E4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E4.1a F54E4.1a 9039   X: 14611403-14611489

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1a.1 14611380 14624854 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

32 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon260287   110   X: 14611380-14611489 Caenorhabditis elegans
Exon260294   204   X: 14611539-14611742 Caenorhabditis elegans
Exon260302   195   X: 14611897-14612091 Caenorhabditis elegans
Exon260310   461   X: 14612147-14612607 Caenorhabditis elegans
Exon260318   293   X: 14612898-14613190 Caenorhabditis elegans
Exon260326   131   X: 14613250-14613380 Caenorhabditis elegans
Exon260334   483   X: 14613431-14613913 Caenorhabditis elegans
Exon260342   386   X: 14614057-14614442 Caenorhabditis elegans
Exon260354   318   X: 14614493-14614810 Caenorhabditis elegans
Exon260358   59   X: 14614858-14614916 Caenorhabditis elegans
Exon260366   538   X: 14614966-14615503 Caenorhabditis elegans
Exon260378   101   X: 14615551-14615651 Caenorhabditis elegans
Exon260382   90   X: 14615874-14615963 Caenorhabditis elegans
Exon260390   101   X: 14616015-14616115 Caenorhabditis elegans
Exon260398   302   X: 14616161-14616462 Caenorhabditis elegans
Exon260406   135   X: 14616522-14616656 Caenorhabditis elegans
Exon260414   424   X: 14616704-14617127 Caenorhabditis elegans
Exon260422   316   X: 14617187-14617502 Caenorhabditis elegans
Exon260430   350   X: 14617691-14618040 Caenorhabditis elegans
Exon260438   371   X: 14618089-14618459 Caenorhabditis elegans
Exon260446   829   X: 14618507-14619335 Caenorhabditis elegans
Exon260454   349   X: 14619890-14620238 Caenorhabditis elegans
Exon260462   173   X: 14620281-14620453 Caenorhabditis elegans
Exon260470   409   X: 14620504-14620912 Caenorhabditis elegans
Exon260478   414   X: 14620959-14621372 Caenorhabditis elegans
Exon260486   166   X: 14621664-14621829 Caenorhabditis elegans
Exon260494   154   X: 14621877-14622030 Caenorhabditis elegans
Exon260502   240   X: 14622088-14622327 Caenorhabditis elegans
Exon260510   99   X: 14622375-14622473 Caenorhabditis elegans
Exon260522   270   X: 14622758-14623027 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1a.1 14611380 14624854 1

1 Sequence

Length
9656

1 Sequence Ontology Term

Identifier Name Description
transcript