WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E4.1h.1 Sequence Name  F54E4.1h.1
Length (nt)  9627   Chromosome Location  X: 14611380-14624858
Chromosome . Primary Identifier  X Chromosome Location . Start  14611380
Chromosome Location . End  14624858 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E4.1h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004313 rbc-1 F54E4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E4.1h F54E4.1h 9006   X: 14611403-14611489

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1h.1 14611380 14624858 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

32 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon260288   110   X: 14611380-14611489 Caenorhabditis elegans
Exon260301   204   X: 14611539-14611742 Caenorhabditis elegans
Exon260309   195   X: 14611897-14612091 Caenorhabditis elegans
Exon260317   461   X: 14612147-14612607 Caenorhabditis elegans
Exon260325   293   X: 14612898-14613190 Caenorhabditis elegans
Exon260333   131   X: 14613250-14613380 Caenorhabditis elegans
Exon260341   483   X: 14613431-14613913 Caenorhabditis elegans
Exon260349   386   X: 14614057-14614442 Caenorhabditis elegans
Exon260357   318   X: 14614493-14614810 Caenorhabditis elegans
Exon260365   59   X: 14614858-14614916 Caenorhabditis elegans
Exon260373   538   X: 14614966-14615503 Caenorhabditis elegans
Exon260377   68   X: 14615551-14615618 Caenorhabditis elegans
Exon260389   90   X: 14615874-14615963 Caenorhabditis elegans
Exon260397   101   X: 14616015-14616115 Caenorhabditis elegans
Exon260405   302   X: 14616161-14616462 Caenorhabditis elegans
Exon260413   135   X: 14616522-14616656 Caenorhabditis elegans
Exon260421   424   X: 14616704-14617127 Caenorhabditis elegans
Exon260429   316   X: 14617187-14617502 Caenorhabditis elegans
Exon260437   350   X: 14617691-14618040 Caenorhabditis elegans
Exon260445   371   X: 14618089-14618459 Caenorhabditis elegans
Exon260453   829   X: 14618507-14619335 Caenorhabditis elegans
Exon260461   349   X: 14619890-14620238 Caenorhabditis elegans
Exon260469   173   X: 14620281-14620453 Caenorhabditis elegans
Exon260477   409   X: 14620504-14620912 Caenorhabditis elegans
Exon260485   414   X: 14620959-14621372 Caenorhabditis elegans
Exon260493   166   X: 14621664-14621829 Caenorhabditis elegans
Exon260501   154   X: 14621877-14622030 Caenorhabditis elegans
Exon260509   240   X: 14622088-14622327 Caenorhabditis elegans
Exon260517   99   X: 14622375-14622473 Caenorhabditis elegans
Exon260529   270   X: 14622758-14623027 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1h.1 14611380 14624858 1

1 Sequence

Length
9627

1 Sequence Ontology Term

Identifier Name Description
transcript