WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E4.1c.1 Sequence Name  F54E4.1c.1
Length (nt)  9057   Chromosome Location  X: 14611403-14624260
Chromosome . Primary Identifier  X Chromosome Location . Start  14611403
Chromosome Location . End  14624260 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E4.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004313 rbc-1 F54E4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E4.1c F54E4.1c 9057   X: 14611403-14611489

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1c.1 14611403 14624260 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

33 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon260289   87   X: 14611403-14611489 Caenorhabditis elegans
Exon260296   204   X: 14611539-14611742 Caenorhabditis elegans
Exon260304   195   X: 14611897-14612091 Caenorhabditis elegans
Exon260312   461   X: 14612147-14612607 Caenorhabditis elegans
Exon260320   293   X: 14612898-14613190 Caenorhabditis elegans
Exon260328   131   X: 14613250-14613380 Caenorhabditis elegans
Exon260336   483   X: 14613431-14613913 Caenorhabditis elegans
Exon260344   386   X: 14614057-14614442 Caenorhabditis elegans
Exon260350   324   X: 14614487-14614810 Caenorhabditis elegans
Exon260360   59   X: 14614858-14614916 Caenorhabditis elegans
Exon260368   538   X: 14614966-14615503 Caenorhabditis elegans
Exon260374   68   X: 14615551-14615618 Caenorhabditis elegans
Exon260384   90   X: 14615874-14615963 Caenorhabditis elegans
Exon260392   101   X: 14616015-14616115 Caenorhabditis elegans
Exon260400   302   X: 14616161-14616462 Caenorhabditis elegans
Exon260408   135   X: 14616522-14616656 Caenorhabditis elegans
Exon260416   424   X: 14616704-14617127 Caenorhabditis elegans
Exon260424   316   X: 14617187-14617502 Caenorhabditis elegans
Exon260432   350   X: 14617691-14618040 Caenorhabditis elegans
Exon260440   371   X: 14618089-14618459 Caenorhabditis elegans
Exon260448   829   X: 14618507-14619335 Caenorhabditis elegans
Exon260456   349   X: 14619890-14620238 Caenorhabditis elegans
Exon260464   173   X: 14620281-14620453 Caenorhabditis elegans
Exon260472   409   X: 14620504-14620912 Caenorhabditis elegans
Exon260480   414   X: 14620959-14621372 Caenorhabditis elegans
Exon260488   166   X: 14621664-14621829 Caenorhabditis elegans
Exon260496   154   X: 14621877-14622030 Caenorhabditis elegans
Exon260504   240   X: 14622088-14622327 Caenorhabditis elegans
Exon260512   99   X: 14622375-14622473 Caenorhabditis elegans
Exon260519   45   X: 14622571-14622615 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1c.1 14611403 14624260 1

1 Sequence

Length
9057

1 Sequence Ontology Term

Identifier Name Description
transcript