WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E4.1e.1 Sequence Name  F54E4.1e.1
Length (nt)  9090   Chromosome Location  X: 14611403-14624260
Chromosome . Primary Identifier  X Chromosome Location . Start  14611403
Chromosome Location . End  14624260 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E4.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004313 rbc-1 F54E4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E4.1e F54E4.1e 9090   X: 14611403-14611489

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1e.1 14611403 14624260 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

33 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon260291   87   X: 14611403-14611489 Caenorhabditis elegans
Exon260298   204   X: 14611539-14611742 Caenorhabditis elegans
Exon260306   195   X: 14611897-14612091 Caenorhabditis elegans
Exon260314   461   X: 14612147-14612607 Caenorhabditis elegans
Exon260322   293   X: 14612898-14613190 Caenorhabditis elegans
Exon260330   131   X: 14613250-14613380 Caenorhabditis elegans
Exon260338   483   X: 14613431-14613913 Caenorhabditis elegans
Exon260346   386   X: 14614057-14614442 Caenorhabditis elegans
Exon260352   324   X: 14614487-14614810 Caenorhabditis elegans
Exon260362   59   X: 14614858-14614916 Caenorhabditis elegans
Exon260370   538   X: 14614966-14615503 Caenorhabditis elegans
Exon260380   101   X: 14615551-14615651 Caenorhabditis elegans
Exon260386   90   X: 14615874-14615963 Caenorhabditis elegans
Exon260394   101   X: 14616015-14616115 Caenorhabditis elegans
Exon260402   302   X: 14616161-14616462 Caenorhabditis elegans
Exon260410   135   X: 14616522-14616656 Caenorhabditis elegans
Exon260418   424   X: 14616704-14617127 Caenorhabditis elegans
Exon260426   316   X: 14617187-14617502 Caenorhabditis elegans
Exon260434   350   X: 14617691-14618040 Caenorhabditis elegans
Exon260442   371   X: 14618089-14618459 Caenorhabditis elegans
Exon260450   829   X: 14618507-14619335 Caenorhabditis elegans
Exon260458   349   X: 14619890-14620238 Caenorhabditis elegans
Exon260466   173   X: 14620281-14620453 Caenorhabditis elegans
Exon260474   409   X: 14620504-14620912 Caenorhabditis elegans
Exon260482   414   X: 14620959-14621372 Caenorhabditis elegans
Exon260490   166   X: 14621664-14621829 Caenorhabditis elegans
Exon260498   154   X: 14621877-14622030 Caenorhabditis elegans
Exon260506   240   X: 14622088-14622327 Caenorhabditis elegans
Exon260514   99   X: 14622375-14622473 Caenorhabditis elegans
Exon260520   45   X: 14622571-14622615 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1e.1 14611403 14624260 1

1 Sequence

Length
9090

1 Sequence Ontology Term

Identifier Name Description
transcript