WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E4.1b.1 Sequence Name  F54E4.1b.1
Length (nt)  9687   Chromosome Location  X: 14611403-14624863
Chromosome . Primary Identifier  X Chromosome Location . Start  14611403
Chromosome Location . End  14624863 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E4.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004313 rbc-1 F54E4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E4.1b F54E4.1b 9084   X: 14611403-14611489

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1b.1 14611403 14624863 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

33 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon260293   87   X: 14611403-14611489 Caenorhabditis elegans
Exon260295   204   X: 14611539-14611742 Caenorhabditis elegans
Exon260303   195   X: 14611897-14612091 Caenorhabditis elegans
Exon260311   461   X: 14612147-14612607 Caenorhabditis elegans
Exon260319   293   X: 14612898-14613190 Caenorhabditis elegans
Exon260327   131   X: 14613250-14613380 Caenorhabditis elegans
Exon260335   483   X: 14613431-14613913 Caenorhabditis elegans
Exon260343   386   X: 14614057-14614442 Caenorhabditis elegans
Exon260355   318   X: 14614493-14614810 Caenorhabditis elegans
Exon260359   59   X: 14614858-14614916 Caenorhabditis elegans
Exon260367   538   X: 14614966-14615503 Caenorhabditis elegans
Exon260379   101   X: 14615551-14615651 Caenorhabditis elegans
Exon260383   90   X: 14615874-14615963 Caenorhabditis elegans
Exon260391   101   X: 14616015-14616115 Caenorhabditis elegans
Exon260399   302   X: 14616161-14616462 Caenorhabditis elegans
Exon260407   135   X: 14616522-14616656 Caenorhabditis elegans
Exon260415   424   X: 14616704-14617127 Caenorhabditis elegans
Exon260423   316   X: 14617187-14617502 Caenorhabditis elegans
Exon260431   350   X: 14617691-14618040 Caenorhabditis elegans
Exon260439   371   X: 14618089-14618459 Caenorhabditis elegans
Exon260447   829   X: 14618507-14619335 Caenorhabditis elegans
Exon260455   349   X: 14619890-14620238 Caenorhabditis elegans
Exon260463   173   X: 14620281-14620453 Caenorhabditis elegans
Exon260471   409   X: 14620504-14620912 Caenorhabditis elegans
Exon260479   414   X: 14620959-14621372 Caenorhabditis elegans
Exon260487   166   X: 14621664-14621829 Caenorhabditis elegans
Exon260495   154   X: 14621877-14622030 Caenorhabditis elegans
Exon260503   240   X: 14622088-14622327 Caenorhabditis elegans
Exon260511   99   X: 14622375-14622473 Caenorhabditis elegans
Exon260518   45   X: 14622571-14622615 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E4.1b.1 14611403 14624863 1

1 Sequence

Length
9687

1 Sequence Ontology Term

Identifier Name Description
transcript