WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201124 Gene Name  F40E10.14
Sequence Name  ? F40E10.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by set-2 and etr-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 96
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201124

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F40E10.14 F40E10.14 96   X: 14684549-14684644
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk964260
gk964029
gk962707
gk964028
gk963810
gk963581
tm11466
gk301608
gk301607

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00201124 14684549 14684644 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_14684645..14684876   232 X: 14684645-14684876 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in set-2(zr2012) animals at embryo stage, comparing to in N2 animals. DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. WBPaper00060014:set-2(zr2012)_upregulated
  Transcripts of noncoding genes that showed significantly increased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_enriched_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00201124 14684549 14684644 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
96

1 Sequence Ontology Term