WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F40E10.2.1 Sequence Name  F40E10.2.1
Length (nt)  831   Chromosome Location  X: 14690833-14692999
Chromosome . Primary Identifier  X Chromosome Location . Start  14690833
Chromosome Location . End  14692999 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F40E10.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004950 sox-3 F40E10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F40E10.2 F40E10.2 639   X: 14692250-14692558

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F40E10.2.1 14690833 14692999 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

4 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon260774   172   X: 14690833-14691004 Caenorhabditis elegans
Exon260775   325   X: 14692234-14692558 Caenorhabditis elegans
Exon260776   126   X: 14692609-14692734 Caenorhabditis elegans
Exon260778   208   X: 14692792-14692999 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F40E10.2.1 14690833 14692999 -1

1 Sequence

Length
831

1 Sequence Ontology Term

Identifier Name Description
transcript