WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F33C8.1.1 Sequence Name  F33C8.1.1
Length (nt)  4060   Chromosome Location  X: 14711579-14718787
Chromosome . Primary Identifier  X Chromosome Location . Start  14711579
Chromosome Location . End  14718787 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F33C8.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006432 atrn-1 F33C8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F33C8.1 F33C8.1 3810   X: 14711594-14711707

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F33C8.1.1 14711579 14718787 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon260825   129   X: 14711579-14711707 Caenorhabditis elegans
Exon260826   113   X: 14712299-14712411 Caenorhabditis elegans
Exon260827   88   X: 14712478-14712565 Caenorhabditis elegans
Exon260828   113   X: 14712614-14712726 Caenorhabditis elegans
Exon260830   114   X: 14712774-14712887 Caenorhabditis elegans
Exon260831   445   X: 14712950-14713394 Caenorhabditis elegans
Exon260832   259   X: 14713444-14713702 Caenorhabditis elegans
Exon260833   86   X: 14713752-14713837 Caenorhabditis elegans
Exon260834   244   X: 14714183-14714426 Caenorhabditis elegans
Exon260835   144   X: 14714479-14714622 Caenorhabditis elegans
Exon260836   184   X: 14714670-14714853 Caenorhabditis elegans
Exon260837   124   X: 14714909-14715032 Caenorhabditis elegans
Exon260838   160   X: 14715079-14715238 Caenorhabditis elegans
Exon260839   288   X: 14715906-14716193 Caenorhabditis elegans
Exon260840   174   X: 14716246-14716419 Caenorhabditis elegans
Exon260841   165   X: 14716472-14716636 Caenorhabditis elegans
Exon260842   144   X: 14716692-14716835 Caenorhabditis elegans
Exon260843   98   X: 14716880-14716977 Caenorhabditis elegans
Exon260844   216   X: 14717032-14717247 Caenorhabditis elegans
Exon260845   98   X: 14717298-14717395 Caenorhabditis elegans
Exon260846   103   X: 14717446-14717548 Caenorhabditis elegans
Exon260849   571   X: 14718217-14718787 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F33C8.1.1 14711579 14718787 1

1 Sequence

Length
4060

1 Sequence Ontology Term

Identifier Name Description
transcript