WormMine: Gene WBGene00304908

• WormBase Gene ID: WBGene00304908
• Gene Name: F20D1.22
• Sequence Name: F20D1.22
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including ash-2; hsf-1; and unc-30 based on RNA-seq studies.
• Biotype: SO:0001217
• Genetic Position: X:±
• Length (nt): 1112

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00304908

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F20D1.22.1	F20D1.22.1	695	X: 14966815-14967926

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:F20D1.22	F20D1.22	135	X: 14967273-14967325

0 RNAi Result

16 Allele

• gk964260
• gk964029
• gk962707
• gk964028
• gk963810
• gk963581
• tm11298
• gk302307
• WBVar01830912
• WBVar00218890
• WBVar01472736
• gk819052
• gk498808
• gk732712
• gk401492
• gk668716

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00304908
• Start: 14966815
• End: 14967926
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrX_14967927..14968899
• Length (nt): 973
• Chromosome Location: X: 14967927-14968899
• Organism: Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression at 5-days-post L4 adult N2 hermaphrodites comparing to 1-day-post L4 adult N2 hermaphrodites.	DESeq2, fold change > 2, FDR < 0.05	WBPaper00065835:Day5_vs_Day1_downregulated
	Transcripts that showed significantly decreased expression in ash-2(RNAi) comparing to in wild type animals injected with vector.	Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed.	WBPaper00066232:ash-2(RNAi)_downregulated_WT
	Transcripts that showed significantly decreased expression in unc-30(ok613) animals at L4 larva stage, comparing to N2 animals.	Genes exhibiting at least two-fold change were considered differentially expressed.	WBPaper00061439:unc-30(ok613)_downregulated
	Transcripts that showed significantly decreased expression in hsf-1(RNAi) comparing to in wild type animals injected with vector.	Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed.	WBPaper00066232:hsf-1(RNAi)_downregulated_WT
	Transcripts that showed significantly decreased expression in unc-30(ok613) animals at L4 larva stage after 4 hours of Pseudomonas aeruginosa infection, comparing to infected N2 animals.	Genes exhibiting at least two-fold change were considered differentially expressed.	WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
	Transcripts that showed significantly increased expression in sin-3(tm1276) comparing to in N2 gonads at young adult stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066085:sin-3(tm1276)_upregulated
Fungi: Myzocytiopsis humicola extract	Transcripts that showed significantly increased expression in N2 L4 larva animals after 4 hours of exposure to oomycete Myzocytiopsis humicola extract.	Differentially expressed genes as determined by Kallisto and Sleuth (pval < 0.01, qval < 0.1, fold change > 2).	WBPaper00065995:M.humicola-extract_upregulated_N2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00304908
• Start: 14966815
• End: 14967926
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1112

1 Sequence Ontology Term