WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07D5.2.1 Sequence Name  R07D5.2.1
Length (nt)  2638   Chromosome Location  X: 15109859-15116614
Chromosome . Primary Identifier  X Chromosome Location . Start  15109859
Chromosome Location . End  15116614 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07D5.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011101 R07D5.2 R07D5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07D5.2 R07D5.2 2289   X: 15110204-15110281

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R07D5.2.1 15109859 15116614 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon261655   423   X: 15109859-15110281 Caenorhabditis elegans
Exon261656   73   X: 15111266-15111338 Caenorhabditis elegans
Exon261657   333   X: 15111394-15111726 Caenorhabditis elegans
Exon261658   116   X: 15111775-15111890 Caenorhabditis elegans
Exon261659   85   X: 15112540-15112624 Caenorhabditis elegans
Exon261660   74   X: 15112670-15112743 Caenorhabditis elegans
Exon261661   123   X: 15112793-15112915 Caenorhabditis elegans
Exon261662   159   X: 15112962-15113120 Caenorhabditis elegans
Exon261663   238   X: 15113180-15113417 Caenorhabditis elegans
Exon261664   153   X: 15114354-15114506 Caenorhabditis elegans
Exon261665   71   X: 15114582-15114652 Caenorhabditis elegans
Exon261666   161   X: 15114709-15114869 Caenorhabditis elegans
Exon261667   158   X: 15114917-15115074 Caenorhabditis elegans
Exon261668   104   X: 15115123-15115226 Caenorhabditis elegans
Exon261669   100   X: 15115276-15115375 Caenorhabditis elegans
Exon261670   101   X: 15115426-15115526 Caenorhabditis elegans
Exon261671   166   X: 15116449-15116614 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R07D5.2.1 15109859 15116614 -1

1 Sequence

Length
2638

1 Sequence Ontology Term

Identifier Name Description
transcript