WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198631 Gene Name  T10B10.12
Sequence Name  ? T10B10.12 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq studies. Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 330
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198631

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T10B10.12 T10B10.12 330   X: 15189335-15189664
 

Other

0 CDSs

0 RNAi Result

11 Allele

Public Name
gk964260
gk962707
gk963810
gk963581
gk867666
gk732714
WBVar00221683
WBVar01942315
gk302813
gk839179
WBVar01760615

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00198631 15189335 15189664 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_15181466..15189334   7869 X: 15181466-15189334 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00198631 15189335 15189664 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
330

1 Sequence Ontology Term