WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T19A6.2a.1 Sequence Name  T19A6.2a.1
Length (nt)  2152   Chromosome Location  I: 8394728-8398626
Chromosome . Primary Identifier  I Chromosome Location . Start  8394728
Chromosome Location . End  8398626 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T19A6.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003596 ngp-1 T19A6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T19A6.2a T19A6.2a 1956   I: 8394749-8394863

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T19A6.2a.1 8394728 8398626 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon21853   136   I: 8394728-8394863 Caenorhabditis elegans
Exon21854   88   I: 8394908-8394995 Caenorhabditis elegans
Exon21855   95   I: 8395042-8395136 Caenorhabditis elegans
Exon21857   134   I: 8395189-8395322 Caenorhabditis elegans
Exon21859   99   I: 8395468-8395566 Caenorhabditis elegans
Exon21861   204   I: 8395783-8395986 Caenorhabditis elegans
Exon21863   105   I: 8396589-8396693 Caenorhabditis elegans
Exon21865   711   I: 8396932-8397642 Caenorhabditis elegans
Exon21867   312   I: 8397976-8398287 Caenorhabditis elegans
Exon21870   268   I: 8398359-8398626 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T19A6.2a.1 8394728 8398626 1

1 Sequence

Length
2152

1 Sequence Ontology Term

Identifier Name Description
transcript