WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39D8.1a.1 Sequence Name  F39D8.1a.1
Length (nt)  3268   Chromosome Location  X: 15409148-15413621
Chromosome . Primary Identifier  X Chromosome Location . Start  15409148
Chromosome Location . End  15413621 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39D8.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004123 pqn-36 F39D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39D8.1a F39D8.1a 2838   X: 15409342-15409397

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1a.1 15409148 15413621 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon262265   250   X: 15409148-15409397 Caenorhabditis elegans
Exon262277   72   X: 15409454-15409525 Caenorhabditis elegans
Exon262281   67   X: 15409568-15409634 Caenorhabditis elegans
Exon262290   420   X: 15410059-15410478 Caenorhabditis elegans
Exon262303   1136   X: 15410565-15411700 Caenorhabditis elegans
Exon262316   760   X: 15411751-15412510 Caenorhabditis elegans
Exon262324   62   X: 15412565-15412626 Caenorhabditis elegans
Exon262332   107   X: 15412848-15412954 Caenorhabditis elegans
Exon262340   113   X: 15413140-15413252 Caenorhabditis elegans
Exon262351   281   X: 15413341-15413621 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1a.1 15409148 15413621 -1

1 Sequence

Length
3268

1 Sequence Ontology Term

Identifier Name Description
transcript