WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39D8.1h.1 Sequence Name  F39D8.1h.1
Length (nt)  2473   Chromosome Location  X: 15409149-15415221
Chromosome . Primary Identifier  X Chromosome Location . Start  15409149
Chromosome Location . End  15415221 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39D8.1h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004123 pqn-36 F39D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39D8.1h F39D8.1h 2280   X: 15409342-15409397

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1h.1 15409149 15415221 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon262266   249   X: 15409149-15409397 Caenorhabditis elegans
Exon262280   72   X: 15409454-15409525 Caenorhabditis elegans
Exon262288   67   X: 15409568-15409634 Caenorhabditis elegans
Exon262289   42   X: 15409806-15409847 Caenorhabditis elegans
Exon262297   420   X: 15410059-15410478 Caenorhabditis elegans
Exon262302   92   X: 15410565-15410656 Caenorhabditis elegans
Exon262310   63   X: 15411140-15411202 Caenorhabditis elegans
Exon262315   450   X: 15411251-15411700 Caenorhabditis elegans
Exon262323   760   X: 15411751-15412510 Caenorhabditis elegans
Exon262331   62   X: 15412565-15412626 Caenorhabditis elegans
Exon262339   107   X: 15412848-15412954 Caenorhabditis elegans
Exon262347   59   X: 15413194-15413252 Caenorhabditis elegans
Exon262354   30   X: 15415192-15415221 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1h.1 15409149 15415221 -1

1 Sequence

Length
2473

1 Sequence Ontology Term

Identifier Name Description
transcript