WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39D8.1b.1 Sequence Name  F39D8.1b.1
Length (nt)  3225   Chromosome Location  X: 15409149-15415493
Chromosome . Primary Identifier  X Chromosome Location . Start  15409149
Chromosome Location . End  15415493 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39D8.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004123 pqn-36 F39D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39D8.1b F39D8.1b 2760   X: 15409342-15409397

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1b.1 15409149 15415493 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon262267   249   X: 15409149-15409397 Caenorhabditis elegans
Exon262273   63   X: 15409454-15409516 Caenorhabditis elegans
Exon262282   67   X: 15409568-15409634 Caenorhabditis elegans
Exon262291   420   X: 15410059-15410478 Caenorhabditis elegans
Exon262304   1136   X: 15410565-15411700 Caenorhabditis elegans
Exon262317   760   X: 15411751-15412510 Caenorhabditis elegans
Exon262325   62   X: 15412565-15412626 Caenorhabditis elegans
Exon262333   107   X: 15412848-15412954 Caenorhabditis elegans
Exon262341   59   X: 15413194-15413252 Caenorhabditis elegans
Exon262355   302   X: 15415192-15415493 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1b.1 15409149 15415493 -1

1 Sequence

Length
3225

1 Sequence Ontology Term

Identifier Name Description
transcript