WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39D8.1d.1 Sequence Name  F39D8.1d.1
Length (nt)  2414   Chromosome Location  X: 15409157-15415221
Chromosome . Primary Identifier  X Chromosome Location . Start  15409157
Chromosome Location . End  15415221 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39D8.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004123 pqn-36 F39D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39D8.1d F39D8.1d 2229   X: 15409342-15409397

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1d.1 15409157 15415221 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon262268   241   X: 15409157-15409397 Caenorhabditis elegans
Exon262275   63   X: 15409454-15409516 Caenorhabditis elegans
Exon262284   67   X: 15409568-15409634 Caenorhabditis elegans
Exon262293   420   X: 15410059-15410478 Caenorhabditis elegans
Exon262298   92   X: 15410565-15410656 Caenorhabditis elegans
Exon262306   63   X: 15411140-15411202 Caenorhabditis elegans
Exon262311   450   X: 15411251-15411700 Caenorhabditis elegans
Exon262319   760   X: 15411751-15412510 Caenorhabditis elegans
Exon262327   62   X: 15412565-15412626 Caenorhabditis elegans
Exon262335   107   X: 15412848-15412954 Caenorhabditis elegans
Exon262343   59   X: 15413194-15413252 Caenorhabditis elegans
Exon262352   30   X: 15415192-15415221 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1d.1 15409157 15415221 -1

1 Sequence

Length
2414

1 Sequence Ontology Term

Identifier Name Description
transcript