WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39D8.1e.1 Sequence Name  F39D8.1e.1
Length (nt)  2369   Chromosome Location  X: 15409211-15415221
Chromosome . Primary Identifier  X Chromosome Location . Start  15409211
Chromosome Location . End  15415221 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39D8.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004123 pqn-36 F39D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39D8.1e F39D8.1e 2238   X: 15409342-15409397

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1e.1 15409211 15415221 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon262269   187   X: 15409211-15409397 Caenorhabditis elegans
Exon262278   72   X: 15409454-15409525 Caenorhabditis elegans
Exon262285   67   X: 15409568-15409634 Caenorhabditis elegans
Exon262294   420   X: 15410059-15410478 Caenorhabditis elegans
Exon262299   92   X: 15410565-15410656 Caenorhabditis elegans
Exon262307   63   X: 15411140-15411202 Caenorhabditis elegans
Exon262312   450   X: 15411251-15411700 Caenorhabditis elegans
Exon262320   760   X: 15411751-15412510 Caenorhabditis elegans
Exon262328   62   X: 15412565-15412626 Caenorhabditis elegans
Exon262336   107   X: 15412848-15412954 Caenorhabditis elegans
Exon262344   59   X: 15413194-15413252 Caenorhabditis elegans
Exon262353   30   X: 15415192-15415221 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1e.1 15409211 15415221 -1

1 Sequence

Length
2369

1 Sequence Ontology Term

Identifier Name Description
transcript