WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46E1.3.1 Sequence Name  C46E1.3.1
Length (nt)  2431   Chromosome Location  X: 15470663-15477409
Chromosome . Primary Identifier  X Chromosome Location . Start  15470663
Chromosome Location . End  15477409 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46E1.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001362 exc-1 C46E1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46E1.3 C46E1.3 2292   X: 15470795-15470943

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46E1.3.1 15470663 15477409 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon262464   281   X: 15470663-15470943 Caenorhabditis elegans
Exon262465   208   X: 15471054-15471261 Caenorhabditis elegans
Exon262466   106   X: 15471380-15471485 Caenorhabditis elegans
Exon262467   122   X: 15471538-15471659 Caenorhabditis elegans
Exon262468   111   X: 15473271-15473381 Caenorhabditis elegans
Exon262469   147   X: 15473435-15473581 Caenorhabditis elegans
Exon262470   379   X: 15473629-15474007 Caenorhabditis elegans
Exon262471   99   X: 15474051-15474149 Caenorhabditis elegans
Exon262472   341   X: 15475910-15476250 Caenorhabditis elegans
Exon262473   300   X: 15476513-15476812 Caenorhabditis elegans
Exon262474   157   X: 15477011-15477167 Caenorhabditis elegans
Exon262475   180   X: 15477230-15477409 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46E1.3.1 15470663 15477409 -1

1 Sequence

Length
2431

1 Sequence Ontology Term

Identifier Name Description
transcript