WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46E1.2.1 Sequence Name  C46E1.2.1
Length (nt)  2347   Chromosome Location  X: 15479017-15485711
Chromosome . Primary Identifier  X Chromosome Location . Start  15479017
Chromosome Location . End  15485711 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46E1.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001556 gcy-36 C46E1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46E1.2 C46E1.2 2028   X: 15479241-15479243

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46E1.2.1 15479017 15485711 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon262503   227   X: 15479017-15479243 Caenorhabditis elegans
Exon262504   74   X: 15479293-15479366 Caenorhabditis elegans
Exon262505   101   X: 15479414-15479514 Caenorhabditis elegans
Exon262506   190   X: 15479609-15479798 Caenorhabditis elegans
Exon262507   137   X: 15479927-15480063 Caenorhabditis elegans
Exon262508   71   X: 15480479-15480549 Caenorhabditis elegans
Exon262509   167   X: 15480591-15480757 Caenorhabditis elegans
Exon262510   130   X: 15480806-15480935 Caenorhabditis elegans
Exon262511   71   X: 15480981-15481051 Caenorhabditis elegans
Exon262512   240   X: 15481099-15481338 Caenorhabditis elegans
Exon262513   146   X: 15484578-15484723 Caenorhabditis elegans
Exon262514   358   X: 15484775-15485132 Caenorhabditis elegans
Exon262515   230   X: 15485198-15485427 Caenorhabditis elegans
Exon262516   205   X: 15485507-15485711 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46E1.2.1 15479017 15485711 1

1 Sequence

Length
2347

1 Sequence Ontology Term

Identifier Name Description
transcript