WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK662.3a.1 Sequence Name  ZK662.3a.1
Length (nt)  3260   Chromosome Location  X: 15708213-15716875
Chromosome . Primary Identifier  X Chromosome Location . Start  15708213
Chromosome Location . End  15716875 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK662.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003638 nhr-48 ZK662.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK662.3a ZK662.3a 2484   X: 15708346-15708354

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZK662.3a.1 15708213 15716875 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon263045   142   X: 15708213-15708354 Caenorhabditis elegans
Exon263048   109   X: 15710056-15710164 Caenorhabditis elegans
Exon263052   78   X: 15710312-15710389 Caenorhabditis elegans
Exon263056   128   X: 15710435-15710562 Caenorhabditis elegans
Exon263060   192   X: 15710826-15711017 Caenorhabditis elegans
Exon263064   90   X: 15711100-15711189 Caenorhabditis elegans
Exon263068   230   X: 15711258-15711487 Caenorhabditis elegans
Exon263072   65   X: 15711625-15711689 Caenorhabditis elegans
Exon263076   138   X: 15711755-15711892 Caenorhabditis elegans
Exon263080   125   X: 15712001-15712125 Caenorhabditis elegans
Exon263084   309   X: 15712634-15712942 Caenorhabditis elegans
Exon263088   189   X: 15712995-15713183 Caenorhabditis elegans
Exon263092   442   X: 15714581-15715022 Caenorhabditis elegans
Exon263096   97   X: 15715069-15715165 Caenorhabditis elegans
Exon263100   150   X: 15715899-15716048 Caenorhabditis elegans
Exon263107   776   X: 15716100-15716875 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZK662.3a.1 15708213 15716875 1

1 Sequence

Length
3260

1 Sequence Ontology Term

Identifier Name Description
transcript