WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK662.3a.1 Sequence Name  ZK662.3a.1
Length (nt)  3260   Chromosome Location  X: 15708213-15716875
Chromosome . Primary Identifier  X Chromosome Location . Start  15708213
Chromosome Location . End  15716875 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK662.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003638 nhr-48 ZK662.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK662.3a ZK662.3a 2484   X: 15708346-15708354

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZK662.3a.1 15708213 15716875 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon263072   142   X: 15708213-15708354 Caenorhabditis elegans
Exon263075   109   X: 15710056-15710164 Caenorhabditis elegans
Exon263079   78   X: 15710312-15710389 Caenorhabditis elegans
Exon263083   128   X: 15710435-15710562 Caenorhabditis elegans
Exon263087   192   X: 15710826-15711017 Caenorhabditis elegans
Exon263091   90   X: 15711100-15711189 Caenorhabditis elegans
Exon263095   230   X: 15711258-15711487 Caenorhabditis elegans
Exon263099   65   X: 15711625-15711689 Caenorhabditis elegans
Exon263103   138   X: 15711755-15711892 Caenorhabditis elegans
Exon263107   125   X: 15712001-15712125 Caenorhabditis elegans
Exon263111   309   X: 15712634-15712942 Caenorhabditis elegans
Exon263115   189   X: 15712995-15713183 Caenorhabditis elegans
Exon263119   442   X: 15714581-15715022 Caenorhabditis elegans
Exon263123   97   X: 15715069-15715165 Caenorhabditis elegans
Exon263127   150   X: 15715899-15716048 Caenorhabditis elegans
Exon263134   776   X: 15716100-15716875 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZK662.3a.1 15708213 15716875 1

1 Sequence

Length
3260

1 Sequence Ontology Term

Identifier Name Description
transcript