WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK662.3d.1 Sequence Name  ZK662.3d.1
Length (nt)  2469   Chromosome Location  X: 15708346-15716232
Chromosome . Primary Identifier  X Chromosome Location . Start  15708346
Chromosome Location . End  15716232 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK662.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003638 nhr-48 ZK662.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK662.3d ZK662.3d 2469   X: 15708346-15708354

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZK662.3d.1 15708346 15716232 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon263047   9   X: 15708346-15708354 Caenorhabditis elegans
Exon263051   109   X: 15710056-15710164 Caenorhabditis elegans
Exon263055   78   X: 15710312-15710389 Caenorhabditis elegans
Exon263059   128   X: 15710435-15710562 Caenorhabditis elegans
Exon263063   192   X: 15710826-15711017 Caenorhabditis elegans
Exon263067   90   X: 15711100-15711189 Caenorhabditis elegans
Exon263071   248   X: 15711258-15711505 Caenorhabditis elegans
Exon263075   65   X: 15711625-15711689 Caenorhabditis elegans
Exon263079   138   X: 15711755-15711892 Caenorhabditis elegans
Exon263083   92   X: 15712034-15712125 Caenorhabditis elegans
Exon263087   309   X: 15712634-15712942 Caenorhabditis elegans
Exon263091   189   X: 15712995-15713183 Caenorhabditis elegans
Exon263095   442   X: 15714581-15715022 Caenorhabditis elegans
Exon263099   97   X: 15715069-15715165 Caenorhabditis elegans
Exon263103   150   X: 15715899-15716048 Caenorhabditis elegans
Exon263105   133   X: 15716100-15716232 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZK662.3d.1 15708346 15716232 1

1 Sequence

Length
2469

1 Sequence Ontology Term

Identifier Name Description
transcript