WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219596 Gene Name  linc-140
Sequence Name  ? F59F4.5 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  X :22.9621± Length (nt)  ? 1829
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219596

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F59F4.5b F59F4.5b 966   X: 15831417-15833245
Transcript:F59F4.5a F59F4.5a 229   X: 15832961-15833245
 

Other

0 CDSs

0 RNAi Result

57 Allele

Public Name
gk964260
gk962707
gk963810
gk963581
gk584806
gk453382
gk888445
gk932401
gk367862
gk561580
gk608247
gk780175
gk495740
gk373448
gk374598
gk377302
gk575941
gk480247
gk424530
gk881188
gk781102
gk963633
gk963982
WBVar01691487
WBVar01929209
WBVar01929208
WBVar01929210
WBVar02122488
WBVar02121514
WBVar02120897

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219596 15831417 15833245 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_15833246..15834071   826 X: 15833246-15834071 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219596 15831417 15833245 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1829

1 Sequence Ontology Term