WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00197887 Gene Name  C30F2.6
Sequence Name  ? C30F2.6 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Is affected by sodium arsenite based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 129
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00197887

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C30F2.6 C30F2.6 129   X: 16090729-16090857
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk964260
gk962707
gk963810
gk963581
gk963633
gk962525
gk962524
tm10847
WBVar01554125

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00197887 16090729 16090857 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_16085800..16090728   4929 X: 16085800-16090728 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
  Genes that showed significantly changed expression in oxidative stressed trx-1(ok1449) animals caused by 10mM sodium arsenite (NaAsO2) comparing to in unstressed trx-1(ok1449). R-Bioconductor package. WBPaper00049266:NaAsO2-Stress_regulated_trx-1(ok1449)

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00197887 16090729 16090857 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
129

1 Sequence Ontology Term