WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F09C8.1.1 Sequence Name  F09C8.1.1
Length (nt)  1231   Chromosome Location  X: 16159648-16163524
Chromosome . Primary Identifier  X Chromosome Location . Start  16159648
Chromosome Location . End  16163524 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F09C8.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008621 F09C8.1 F09C8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F09C8.1 F09C8.1 1125   X: 16159727-16159795

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F09C8.1.1 16159648 16163524 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon263708   148   X: 16159648-16159795 Caenorhabditis elegans
Exon263709   171   X: 16160433-16160603 Caenorhabditis elegans
Exon263710   120   X: 16160725-16160844 Caenorhabditis elegans
Exon263711   55   X: 16160930-16160984 Caenorhabditis elegans
Exon263712   158   X: 16161040-16161197 Caenorhabditis elegans
Exon263713   84   X: 16162239-16162322 Caenorhabditis elegans
Exon263714   167   X: 16162371-16162537 Caenorhabditis elegans
Exon263715   112   X: 16162586-16162697 Caenorhabditis elegans
Exon263716   170   X: 16163262-16163431 Caenorhabditis elegans
Exon263717   46   X: 16163479-16163524 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F09C8.1.1 16159648 16163524 -1

1 Sequence

Length
1231

1 Sequence Ontology Term

Identifier Name Description
transcript