WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W10G6.2a.1 Sequence Name  W10G6.2a.1
Length (nt)  1635   Chromosome Location  X: 16254843-16262122
Chromosome . Primary Identifier  X Chromosome Location . Start  16254843
Chromosome Location . End  16262122 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W10G6.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004789 sgk-1 W10G6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W10G6.2a W10G6.2a 1362   X: 16255015-16255106

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W10G6.2a.1 16254843 16262122 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon263797   264   X: 16254843-16255106 Caenorhabditis elegans
Exon263799   307   X: 16256731-16257037 Caenorhabditis elegans
Exon263802   220   X: 16257457-16257676 Caenorhabditis elegans
Exon263805   113   X: 16257754-16257866 Caenorhabditis elegans
Exon263808   132   X: 16257952-16258083 Caenorhabditis elegans
Exon263811   142   X: 16258138-16258279 Caenorhabditis elegans
Exon263814   84   X: 16258913-16258996 Caenorhabditis elegans
Exon263817   137   X: 16259054-16259190 Caenorhabditis elegans
Exon263820   75   X: 16259238-16259312 Caenorhabditis elegans
Exon263823   68   X: 16260061-16260128 Caenorhabditis elegans
Exon263827   93   X: 16262030-16262122 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W10G6.2a.1 16254843 16262122 -1

1 Sequence

Length
1635

1 Sequence Ontology Term

Identifier Name Description
transcript