WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E10.1b.1 Sequence Name  F52E10.1b.1
Length (nt)  3856   Chromosome Location  X: 16275763-16282534
Chromosome . Primary Identifier  X Chromosome Location . Start  16275763
Chromosome Location . End  16282534 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E10.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004745 sdc-1 F52E10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E10.1b F52E10.1b 3612   X: 16275773-16275846

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52E10.1b.1 16275763 16282534 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon263850   84   X: 16275763-16275846 Caenorhabditis elegans
Exon263853   233   X: 16276008-16276240 Caenorhabditis elegans
Exon263855   236   X: 16276684-16276919 Caenorhabditis elegans
Exon263856   296   X: 16276961-16277256 Caenorhabditis elegans
Exon263859   331   X: 16277310-16277640 Caenorhabditis elegans
Exon263861   183   X: 16277867-16278049 Caenorhabditis elegans
Exon263863   239   X: 16278238-16278476 Caenorhabditis elegans
Exon263865   386   X: 16278634-16279019 Caenorhabditis elegans
Exon263867   134   X: 16279152-16279285 Caenorhabditis elegans
Exon263869   63   X: 16280028-16280090 Caenorhabditis elegans
Exon263871   240   X: 16280189-16280428 Caenorhabditis elegans
Exon263873   876   X: 16280657-16281532 Caenorhabditis elegans
Exon263875   133   X: 16281931-16282063 Caenorhabditis elegans
Exon263877   422   X: 16282113-16282534 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52E10.1b.1 16275763 16282534 1

1 Sequence

Length
3856

1 Sequence Ontology Term

Identifier Name Description
transcript