WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T27B1.2b Sequence Name  T27B1.2b
Length (nt)  1419   Chromosome Location  X: 16536890-16536983
Chromosome . Primary Identifier  X Chromosome Location . Start  16536890
Chromosome Location . End  16536983
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27B1.2b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE54366 PAT-9, isoform b 52.7 472 Caenorhabditis elegans
 

Other

10 RNAi

WormBase ID
WBRNAi00009226
WBRNAi00081192
WBRNAi00026413
WBRNAi00054272
WBRNAi00107234
WBRNAi00107525
WBRNAi00081188
WBRNAi00107150
WBRNAi00111582
WBRNAi00111581

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T27B1.2b 16536890 16536983 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003933 pat-9 T27B1.2 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:T27B1.2b 16536890 16536983 1
CDS:T27B1.2b 16537690 16537940 1
CDS:T27B1.2b 16537996 16538124 1
CDS:T27B1.2b 16538327 16538721 1
CDS:T27B1.2b 16538904 16539078 1
CDS:T27B1.2b 16539172 16539546 1

1 Sequence

Length
1419

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T27B1.2b.1 T27B1.2b.1 2075   X: 16536890-16540202