WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F59C12.1b.1 Sequence Name  F59C12.1b.1
Length (nt)  2219   Chromosome Location  X: 16595231-16602245
Chromosome . Primary Identifier  X Chromosome Location . Start  16595231
Chromosome Location . End  16602245 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F59C12.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000401 cdh-9 F59C12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F59C12.1b F59C12.1b 1758   X: 16595240-16595363

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F59C12.1b.1 16595231 16602245 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264414   133   X: 16595231-16595363 Caenorhabditis elegans
Exon264418   146   X: 16596126-16596271 Caenorhabditis elegans
Exon264420   66   X: 16597497-16597562 Caenorhabditis elegans
Exon264422   103   X: 16597633-16597735 Caenorhabditis elegans
Exon264424   311   X: 16597785-16598095 Caenorhabditis elegans
Exon264426   88   X: 16598407-16598494 Caenorhabditis elegans
Exon264428   89   X: 16599228-16599316 Caenorhabditis elegans
Exon264430   99   X: 16599680-16599778 Caenorhabditis elegans
Exon264432   60   X: 16599829-16599888 Caenorhabditis elegans
Exon264434   135   X: 16600328-16600462 Caenorhabditis elegans
Exon264436   179   X: 16600509-16600687 Caenorhabditis elegans
Exon264438   118   X: 16600740-16600857 Caenorhabditis elegans
Exon264440   224   X: 16600910-16601133 Caenorhabditis elegans
Exon264441   468   X: 16601778-16602245 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F59C12.1b.1 16595231 16602245 1

1 Sequence

Length
2219

1 Sequence Ontology Term

Identifier Name Description
transcript