WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F59C12.1a.1 Sequence Name  F59C12.1a.1
Length (nt)  2194   Chromosome Location  X: 16595238-16602232
Chromosome . Primary Identifier  X Chromosome Location . Start  16595238
Chromosome Location . End  16602232 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F59C12.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000401 cdh-9 F59C12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F59C12.1a F59C12.1a 1872   X: 16595240-16595363

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F59C12.1a.1 16595238 16602232 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264442   126   X: 16595238-16595363 Caenorhabditis elegans
Exon264444   146   X: 16596126-16596271 Caenorhabditis elegans
Exon264446   66   X: 16597497-16597562 Caenorhabditis elegans
Exon264448   103   X: 16597633-16597735 Caenorhabditis elegans
Exon264450   311   X: 16597785-16598095 Caenorhabditis elegans
Exon264452   88   X: 16598407-16598494 Caenorhabditis elegans
Exon264454   89   X: 16599228-16599316 Caenorhabditis elegans
Exon264456   99   X: 16599680-16599778 Caenorhabditis elegans
Exon264458   60   X: 16599829-16599888 Caenorhabditis elegans
Exon264460   135   X: 16600328-16600462 Caenorhabditis elegans
Exon264462   179   X: 16600509-16600687 Caenorhabditis elegans
Exon264464   118   X: 16600740-16600857 Caenorhabditis elegans
Exon264466   224   X: 16600910-16601133 Caenorhabditis elegans
Exon264469   450   X: 16601783-16602232 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F59C12.1a.1 16595238 16602232 1

1 Sequence

Length
2194

1 Sequence Ontology Term

Identifier Name Description
transcript