WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T21F2.1a.1 Sequence Name  T21F2.1a.1
Length (nt)  1808   Chromosome Location  X: 16711681-16720670
Chromosome . Primary Identifier  X Chromosome Location . Start  16711681
Chromosome Location . End  16720670 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T21F2.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020657 lgc-53 T21F2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T21F2.1a T21F2.1a 1494   X: 16711798-16711890

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T21F2.1a.1 16711681 16720670 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264625   210   X: 16711681-16711890 Caenorhabditis elegans
Exon264626   177   X: 16712440-16712616 Caenorhabditis elegans
Exon264628   57   X: 16717130-16717186 Caenorhabditis elegans
Exon264630   207   X: 16718023-16718229 Caenorhabditis elegans
Exon264632   156   X: 16718975-16719130 Caenorhabditis elegans
Exon264634   113   X: 16719255-16719367 Caenorhabditis elegans
Exon264636   97   X: 16719411-16719507 Caenorhabditis elegans
Exon264638   63   X: 16719552-16719614 Caenorhabditis elegans
Exon264640   159   X: 16719741-16719899 Caenorhabditis elegans
Exon264642   56   X: 16719957-16720012 Caenorhabditis elegans
Exon264644   95   X: 16720064-16720158 Caenorhabditis elegans
Exon264646   131   X: 16720201-16720331 Caenorhabditis elegans
Exon264649   287   X: 16720384-16720670 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T21F2.1a.1 16711681 16720670 1

1 Sequence

Length
1808

1 Sequence Ontology Term

Identifier Name Description
transcript