WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T21F2.1b.1 Sequence Name  T21F2.1b.1
Length (nt)  1302   Chromosome Location  X: 16712538-16720473
Chromosome . Primary Identifier  X Chromosome Location . Start  16712538
Chromosome Location . End  16720473 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T21F2.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020657 lgc-53 T21F2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T21F2.1b T21F2.1b 837   X: 16719098-16719130

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T21F2.1b.1 16712538 16720473 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264627   80   X: 16712538-16712617 Caenorhabditis elegans
Exon264629   55   X: 16717132-16717186 Caenorhabditis elegans
Exon264631   207   X: 16718023-16718229 Caenorhabditis elegans
Exon264633   156   X: 16718975-16719130 Caenorhabditis elegans
Exon264635   113   X: 16719255-16719367 Caenorhabditis elegans
Exon264637   97   X: 16719411-16719507 Caenorhabditis elegans
Exon264639   63   X: 16719552-16719614 Caenorhabditis elegans
Exon264641   159   X: 16719741-16719899 Caenorhabditis elegans
Exon264643   56   X: 16719957-16720012 Caenorhabditis elegans
Exon264645   95   X: 16720064-16720158 Caenorhabditis elegans
Exon264647   131   X: 16720201-16720331 Caenorhabditis elegans
Exon264648   90   X: 16720384-16720473 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T21F2.1b.1 16712538 16720473 1

1 Sequence

Length
1302

1 Sequence Ontology Term

Identifier Name Description
transcript