WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01C8.7.1 Sequence Name  T01C8.7.1
Length (nt)  2379   Chromosome Location  X: 16803321-16807115
Chromosome . Primary Identifier  X Chromosome Location . Start  16803321
Chromosome Location . End  16807115 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01C8.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003168 mec-4 T01C8.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01C8.7 T01C8.7 2307   X: 16803392-16803577

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01C8.7.1 16803321 16807115 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264804   257   X: 16803321-16803577 Caenorhabditis elegans
Exon264805   76   X: 16803717-16803792 Caenorhabditis elegans
Exon264806   129   X: 16803841-16803969 Caenorhabditis elegans
Exon264807   61   X: 16804027-16804087 Caenorhabditis elegans
Exon264808   115   X: 16804132-16804246 Caenorhabditis elegans
Exon264809   96   X: 16804370-16804465 Caenorhabditis elegans
Exon264810   173   X: 16804517-16804689 Caenorhabditis elegans
Exon264811   89   X: 16804783-16804871 Caenorhabditis elegans
Exon264812   158   X: 16804914-16805071 Caenorhabditis elegans
Exon264813   149   X: 16805119-16805267 Caenorhabditis elegans
Exon264814   161   X: 16805365-16805525 Caenorhabditis elegans
Exon264815   112   X: 16805742-16805853 Caenorhabditis elegans
Exon264816   363   X: 16805906-16806268 Caenorhabditis elegans
Exon264817   256   X: 16806316-16806571 Caenorhabditis elegans
Exon264818   184   X: 16806932-16807115 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01C8.7.1 16803321 16807115 -1

1 Sequence

Length
2379

1 Sequence Ontology Term

Identifier Name Description
transcript