Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y13C8A.3 | Y13C8A.3 |
178
 |
X: 16886246-16886423 |
Other
8 Allele
| Public Name |
|---|
| gk964260 |
| gk962707 |
| gk963810 |
| gk963581 |
| WBVar01529178 |
| WBVar01947008 |
| WBVar02120748 |
| gk306801 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00197253 | 16886246 | 16886423 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_16884474..16886245 | 1772 | X: 16884474-16886245 | Caenorhabditis elegans |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Genomic locations differentially bound by CAMT-1 identified using the DiffBind algorithm for ChIP-seq data with a false discovery rate (FDR) threshold of 0.05. | RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis. | WBPaper00061902:CAMT-1_interacting | |
| Transcripts that showed significantly decreased expression in srbc-48(ac23);kyIs262;fer-1(b232ts) comparing to in kyIs262;fer-1(b232ts), 24h after infection with P.aeruginosa. | DESeq2, FDR <0.05, fold change > 2. | WBPaper00059664:srbc-48(ac23)_downregulated | |
| Transcripts that showed significantly increased expression in uaf-1(n4588) comparing to in N2 at embryo stage. | DEGSeq 1.18.0, p < 0.05, fold change > 2. | WBPaper00055364:uaf-1(n4588)_upregulated |