WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F35B3.5e.1 Sequence Name  F35B3.5e.1
Length (nt)  1794   Chromosome Location  X: 17022269-17025659
Chromosome . Primary Identifier  X Chromosome Location . Start  17022269
Chromosome Location . End  17025659 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F35B3.5e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004121 ptrn-1 F35B3.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F35B3.5e F35B3.5e 1794   X: 17022269-17022410

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F35B3.5e.1 17022269 17025659 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon265145   142   X: 17022269-17022410 Caenorhabditis elegans
Exon265150   77   X: 17022460-17022536 Caenorhabditis elegans
Exon265155   96   X: 17022584-17022679 Caenorhabditis elegans
Exon265160   110   X: 17022985-17023094 Caenorhabditis elegans
Exon265165   397   X: 17023447-17023843 Caenorhabditis elegans
Exon265170   131   X: 17023891-17024021 Caenorhabditis elegans
Exon265175   79   X: 17024072-17024150 Caenorhabditis elegans
Exon265180   189   X: 17024258-17024446 Caenorhabditis elegans
Exon265185   216   X: 17024518-17024733 Caenorhabditis elegans
Exon265188   207   X: 17025131-17025337 Caenorhabditis elegans
Exon265189   150   X: 17025510-17025659 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F35B3.5e.1 17022269 17025659 -1

1 Sequence

Length
1794

1 Sequence Ontology Term

Identifier Name Description
transcript