WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08G2.2.1 Sequence Name  T08G2.2.1
Length (nt)  1467   Chromosome Location  X: 17205159-17209365
Chromosome . Primary Identifier  X Chromosome Location . Start  17205159
Chromosome Location . End  17209365 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08G2.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020365 T08G2.2 T08G2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08G2.2 T08G2.2 1197   X: 17205429-17205638

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08G2.2.1 17205159 17209365 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon265633   480   X: 17205159-17205638 Caenorhabditis elegans
Exon265634   164   X: 17205809-17205972 Caenorhabditis elegans
Exon265635   127   X: 17206054-17206180 Caenorhabditis elegans
Exon265636   102   X: 17206504-17206605 Caenorhabditis elegans
Exon265637   107   X: 17207806-17207912 Caenorhabditis elegans
Exon265638   79   X: 17207960-17208038 Caenorhabditis elegans
Exon265639   121   X: 17208156-17208276 Caenorhabditis elegans
Exon265640   102   X: 17208325-17208426 Caenorhabditis elegans
Exon265641   71   X: 17209130-17209200 Caenorhabditis elegans
Exon265642   114   X: 17209252-17209365 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08G2.2.1 17205159 17209365 -1

1 Sequence

Length
1467

1 Sequence Ontology Term

Identifier Name Description
transcript