WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK54.1a.1 Sequence Name  ZK54.1a.1
Length (nt)  1629   Chromosome Location  X: 17460778-17464087
Chromosome . Primary Identifier  X Chromosome Location . Start  17460778
Chromosome Location . End  17464087 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK54.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022647 slc-17.1 ZK54.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK54.1a ZK54.1a 1440   X: 17460926-17461066

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK54.1a.1 17460778 17464087 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon266012   289   X: 17460778-17461066 Caenorhabditis elegans
Exon266014   239   X: 17461113-17461351 Caenorhabditis elegans
Exon266016   133   X: 17461452-17461584 Caenorhabditis elegans
Exon266018   144   X: 17461632-17461775 Caenorhabditis elegans
Exon266020   128   X: 17462182-17462309 Caenorhabditis elegans
Exon266022   86   X: 17462671-17462756 Caenorhabditis elegans
Exon266024   181   X: 17462806-17462986 Caenorhabditis elegans
Exon266026   148   X: 17463034-17463181 Caenorhabditis elegans
Exon266028   164   X: 17463749-17463912 Caenorhabditis elegans
Exon266030   117   X: 17463971-17464087 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK54.1a.1 17460778 17464087 -1

1 Sequence

Length
1629

1 Sequence Ontology Term

Identifier Name Description
transcript